IL_4V7K_312

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_312 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0935

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V7K|1|Ba|G|292
4V7K|1|Ba|G|293
*
4V7K|1|Ba|U|304
4V7K|1|Ba|G|305
4V7K|1|Ba|G|306
4V7K|1|Ba|C|307
4V7K|1|Ba|C|308

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16