IL_4V7K_318

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_318 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1231

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V7K|1|Ba|G|450
4V7K|1|Ba|A|451
4V7K|1|Ba|A|452
4V7K|1|Ba|A|453
4V7K|1|Ba|C|454
4V7K|1|Ba|C|455
*
4V7K|1|Ba|G|476
4V7K|1|Ba|A|477
4V7K|1|Ba|C|479
4V7K|1|Ba|U|480
4V7K|1|Ba|G|481
4V7K|1|Ba|A|482
4V7K|1|Ba|C|483

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16