IL_4V7K_337
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7K_337 not in the Motif Atlas
- Geometric match to IL_4KYY_002
- Geometric discrepancy: 0.3457
- The information below is about IL_4KYY_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V7K|1|Ba|U|952
4V7K|1|Ba|G|953
4V7K|1|Ba|G|954
*
4V7K|1|Ba|C|1226
4V7K|1|Ba|A|1227
4V7K|1|Ba|C|1228
4V7K|1|Ba|A|1229
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain Bm
- 30S ribosomal protein S13
- Chain Bs
- 30S ribosomal protein S19
- Chain Bv
- Transfer RNA; tRNA
- Chain By
- Toxin relE
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