3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCC*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_034 not in the Motif Atlas
Geometric match to IL_3SJ2_001
Geometric discrepancy: 0.2007
The information below is about IL_3SJ2_001
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4V7L|1|AA|G|588
4V7L|1|AA|C|589
4V7L|1|AA|C|590
*
4V7L|1|AA|G|649
4V7L|1|AA|G|650
4V7L|1|AA|C|651

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AO
30S ribosomal protein S15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4422 s
Application loaded.