3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCAC*GUUCCC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_050 not in the Motif Atlas
Homologous match to IL_6CZR_149
Geometric discrepancy: 0.2355
The information below is about IL_6CZR_149
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93211.1
Basepair signature
cWW-cWS-cWW-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

4V7L|1|AA|G|933
4V7L|1|AA|C|934
4V7L|1|AA|A|935
4V7L|1|AA|C|936
*
4V7L|1|AA|G|1379
4V7L|1|AA|U|1380
4V7L|1|AA|U|1381
4V7L|1|AA|C|1382
4V7L|1|AA|C|1383
4V7L|1|AA|C|1384

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AV
RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
Chain AX
Transfer RNA; tRNA
Chain AY
Transfer RNA; tRNA

Coloring options:


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