IL_4V7L_090

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V7L|1|BA|U|504, 4V7L|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_090 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.091

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V7L|1|BA|G|481
4V7L|1|BA|A|482
4V7L|1|BA|A|483
4V7L|1|BA|C|484
*
4V7L|1|BA|G|496
4V7L|1|BA|A|497
4V7L|1|BA|G|498
4V7L|1|BA|U|499
4V7L|1|BA|G|500
4V7L|1|BA|A|501
4V7L|1|BA|A|502
4V7L|1|BA|A|503
4V7L|1|BA|U|504
4V7L|1|BA|A|505
4V7L|1|BA|G|506
4V7L|1|BA|A|507
4V7L|1|BA|G|508
4V7L|1|BA|C|509

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24