IL_4V7L_165

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_165 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.2203

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7L|1|BA|U|2122
4V7L|1|BA|G|2123
4V7L|1|BA|G|2124
*
4V7L|1|BA|C|2174
4V7L|1|BA|C|2175
4V7L|1|BA|A|2176

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1