IL_4V7L_167

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

4V7L|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_167 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3808

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_64900.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

4V7L|1|BA|C|2128
4V7L|1|BA|C|2129
4V7L|1|BA|U|2130
4V7L|1|BA|G|2131
4V7L|1|BA|U|2132
4V7L|1|BA|G|2133
4V7L|1|BA|A|2134
4V7L|1|BA|A|2135
4V7L|1|BA|C|2136
*
4V7L|1|BA|G|2155
4V7L|1|BA|G|2156
4V7L|1|BA|G|2157
4V7L|1|BA|A|2158
4V7L|1|BA|G|2159
4V7L|1|BA|G|2160

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1