3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUC*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_168 not in the Motif Atlas
Geometric match to IL_4J50_001
Geometric discrepancy: 0.2727
The information below is about IL_4J50_001
Detailed Annotation
Isolated cWH basepair
Broad Annotation
Isolated cWH basepair
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4V7L|1|BA|C|2261
4V7L|1|BA|U|2262
4V7L|1|BA|C|2263
*
4V7L|1|BA|G|2277
4V7L|1|BA|A|2278
4V7L|1|BA|G|2279

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AX
Transfer RNA; tRNA
Chain B0
50S ribosomal protein L27
Chain BQ
50S ribosomal protein L16

Coloring options:


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