IL_4V7L_228

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGU*AUACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_228 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3129

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V7L|1|CA|C|596
4V7L|1|CA|G|597
4V7L|1|CA|U|598
*
4V7L|1|CA|A|640
4V7L|1|CA|U|641
4V7L|1|CA|A|642
4V7L|1|CA|C|643
4V7L|1|CA|G|644

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CQ

30S ribosomal protein S17