IL_4V7L_276

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_276 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1253

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V7L|1|DA|C|77
4V7L|1|DA|A|78
4V7L|1|DA|G|79
*
4V7L|1|DA|C|107
4V7L|1|DA|U|108
4V7L|1|DA|G|109

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L29

Chain DY

50S ribosomal protein L24