IL_4V7L_296

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_296 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1707

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V7L|1|DA|C|812
4V7L|1|DA|U|813
4V7L|1|DA|C|814
*
4V7L|1|DA|G|1193
4V7L|1|DA|A|1194
4V7L|1|DA|G|1195

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L15

Chain DU

50S ribosomal protein L20

Chain DV

50S ribosomal protein L21