3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAUA*UGUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_305 not in the Motif Atlas
Geometric match to IL_4EYA_010
Geometric discrepancy: 0.3004
The information below is about IL_4EYA_010
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

4V7L|1|DA|G|869
4V7L|1|DA|A|870
4V7L|1|DA|U|871
4V7L|1|DA|A|872
*
4V7L|1|DA|U|905
4V7L|1|DA|G|906
4V7L|1|DA|U|907
4V7L|1|DA|C|908

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DQ
50S ribosomal protein L16
Chain DZ
50S ribosomal protein L25

Coloring options:


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