3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCUAAG*CGAAGC
Length
12 nucleotides
Bulged bases
4V7L|1|DA|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_312 not in the Motif Atlas
Geometric match to IL_7A0S_098
Geometric discrepancy: 0.2528
The information below is about IL_7A0S_098
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V7L|1|DA|G|997
4V7L|1|DA|C|998
4V7L|1|DA|U|999
4V7L|1|DA|A|1000
4V7L|1|DA|A|1001
4V7L|1|DA|G|1002
*
4V7L|1|DA|C|1153
4V7L|1|DA|G|1154
4V7L|1|DA|A|1155
4V7L|1|DA|A|1156
4V7L|1|DA|G|1157
4V7L|1|DA|C|1158

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain D3
50S ribosomal protein L30
Chain DB
5S ribosomal RNA; 5S rRNA
Chain DU
50S ribosomal protein L20
Chain DV
50S ribosomal protein L21

Coloring options:


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