IL_4V7L_325

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGG*CCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGGG,CCCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_325 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2183

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7L|1|DA|A|1278
4V7L|1|DA|G|1279
4V7L|1|DA|G|1280
4V7L|1|DA|G|1281
*
4V7L|1|DA|C|1289
4V7L|1|DA|C|1290
4V7L|1|DA|C|1291
4V7L|1|DA|U|1292

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17