IL_4V7L_348

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_348 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.1729

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7L|1|DA|C|1765
4V7L|1|DA|U|1766
4V7L|1|DA|C|1767
*
4V7L|1|DA|G|1985
4V7L|1|DA|A|1986
4V7L|1|DA|G|1987

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DO

50S ribosomal protein L14