IL_4V7L_363

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V7L|1|DA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_363 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1626

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V7L|1|DA|G|2070
4V7L|1|DA|A|2071
*
4V7L|1|DA|U|2438
4V7L|1|DA|A|2439
4V7L|1|DA|C|2440
4V7L|1|DA|C|2441

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2