IL_4V7L_374

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_374 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.1613

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V7L|1|DA|C|2347
4V7L|1|DA|U|2348
4V7L|1|DA|G|2349
*
4V7L|1|DA|C|2368
4V7L|1|DA|A|2369
4V7L|1|DA|G|2370

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35