IL_4V7L_418

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGG*CCC

Length

8 nucleotides

Bulged bases

4V7L|1|BA|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7L_418 not in the Motif Atlas

Geometric match to IL_8VTW_030

Geometric discrepancy: 0.373

The information below is about IL_8VTW_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79529.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4V7L|1|BA|G|1846
4V7L|1|BA|A|1847
4V7L|1|BA|A|1848
4V7L|1|BA|G|1849
4V7L|1|BA|G|1850
*
4V7L|1|BA|C|1892
4V7L|1|BA|C|1893
4V7L|1|BA|C|1894

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AY

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2