#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-73-64-5
1 IL_8VTW_0308VTW0.30150Minor groove platform with extra cWW (H)1A LSU rRNAA899A900A901C902*G875C876U877cWWtHSncWWcWW
2 IL_4P3T_0024P3T0.00000B+ARNA (23-mer)G39A40A41G42*C7C8C9cWWncWWcWW
3 IL_4V9F_0534V9F0.168800 LSU rRNAG1475A1476C1477U1478*A1465C1466C1467cWWcBWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAC*GCU1
GAAG*CCC1
GACU*ACC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*C2
AC*C1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Minor groove platform with extra cWW (H) (1)
  • Basepair signature
    cWW-L-R-L-cWW
    Heat map statistics
    Min 0.17 | Avg 0.18 | Max 0.32
    Help

    Coloring options:

    IL_8VTW_030:IL_8VTW_030 = 0IL_8VTW_030:IL_4P3T_002 = 0.3015IL_8VTW_030:IL_4V9F_053 = 0.3183IL_4P3T_002:IL_8VTW_030 = 0.3015IL_4P3T_002:IL_4P3T_002 = 0IL_4P3T_002:IL_4V9F_053 = 0.1688IL_4V9F_053:IL_8VTW_030 = 0.3183IL_4V9F_053:IL_4P3T_002 = 0.1688IL_4V9F_053:IL_4V9F_053 = 0IL_8VTW_030IL_4P3T_002IL_4V9F_053Discrepancy0.000.050.100.150.200.250.30
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