Motif IL_79529.1 Version IL_79529.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VTW_030 | 8VTW | 0.3015 | 0 | Minor groove platform with extra cWW (H) | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | ncWW | cWW |
| 2 | IL_4P3T_002 | 4P3T | 0.0000 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | ||
| 3 | IL_4V9F_053 | 4V9F | 0.1688 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAC*GCU | 1 |
| GAAG*CCC | 1 |
| GACU*ACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*C | 2 |
| AC*C | 1 |
- Annotations
-
- (2)
- Minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.18 | Max 0.32
Coloring options: