IL_4V7L_448
3D structure
- PDB id
- 4V7L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of viomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCUGUAG*CGAAGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7L_448 not in the Motif Atlas
- Homologous match to IL_4WF9_031
- Geometric discrepancy: 0.233
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7L|1|DA|C|856
4V7L|1|DA|C|857
4V7L|1|DA|U|858
4V7L|1|DA|G|859
4V7L|1|DA|U|860
4V7L|1|DA|A|861
4V7L|1|DA|G|862
*
4V7L|1|DA|C|915
4V7L|1|DA|G|916
4V7L|1|DA|A|917
4V7L|1|DA|A|918
4V7L|1|DA|G|919
4V7L|1|DA|G|920
4V7L|1|DA|G|921
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain D3
- 50S ribosomal protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L16
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