Motif IL_94128.4 Version IL_94128.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8B0X_090 | 8B0X | 0.1772 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | a | LSU rRNA | G | 858 | G | 859 | G | 860 | G | 861 | U | 862 | A | 863 | G | 864 | * | C | 917 | G | 918 | A | 919 | A | 920 | U | 921 | A | 922 | C | 923 | cWW | cWW | cWB | cSH | tWH | tHS | cWW |
| 2 | IL_4WF9_031 | 4WF9 | 0.1806 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | G | 901 | A | 902 | G | 903 | G | 904 | U | 905 | A | 906 | G | 907 | * | C | 960 | G | 961 | A | 962 | A | 963 | U | 964 | G | 965 | C | 966 | cWW | cWW | ncWB | cSH | tWH | tHS | cWW |
| 3 | IL_9H3G_044 | 9H3G | 0.0966 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | A | LSU rRNA | C | 1002 | G | 1003 | G | 1004 | G | 1005 | U | 1006 | A | 1007 | A | 1008 | * | PSU | 1062 | A | 1063 | A | 1064 | A | 1065 | OMU | 1066 | A | 1067 | G | 1068 | cWW | cWW | cWB | cSH | tWH | tHS | cWW |
| 4 | IL_9AXU_037 | 9AXU | 0.0558 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | 2 | LSU rRNA | G | 1023 | A | 1024 | G | 1025 | G | 1026 | U | 1027 | A | 1028 | A | 1029 | * | U | 1084 | A | 1085 | A | 1086 | A | 1087 | U | 1088 | A | 1089 | U | 1090 | cWW | cwW | cWB | cSH | tWH | tHS | cWW |
| 5 | IL_9PN5_037 | 9PN5 | 0.0392 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | A1 | LSU rRNA | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | * | PSU | 1052 | A | 1053 | A | 1054 | A | 1055 | PSU | 1056 | A | 1057 | U | 1058 | cWW | cwW | cWB | cSH | tWH | tHS | cWW |
| 6 | IL_9SUM_037 | 9SUM | 0.0000 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge (H) | A | LSU rRNA | G | 938 | A | 939 | G | 940 | G | 941 | U | 942 | A | 943 | A | 944 | * | U | 999 | A | 1000 | A | 1001 | A | 1002 | U | 1003 | A | 1004 | U | 1005 | cWW | cwW | cWB | cSH | tWH | tHS | cWW |
| 7 | IL_8OI5_041 | 8OI5 | 0.0511 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | 1 | LSU rRNA | G | 987 | A | 988 | G | 989 | G | 990 | U | 991 | A | 992 | A | 993 | * | U | 1048 | A | 1049 | A | 1050 | A | 1051 | U | 1052 | A | 1053 | U | 1054 | cWW | cwW | cWB | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGUAA*UAAAUAU | 3 |
| GGGGUAG*CGAAUAC | 1 |
| GAGGUAG*CGAAUGC | 1 |
| CGGGUAA*(PSU)AAA(OMU)AG | 1 |
| GAGGUAA*(PSU)AAA(PSU)AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUA*AAAUA | 3 |
| GGGUA*GAAUA | 1 |
| AGGUA*GAAUG | 1 |
| GGGUA*AAA(OMU)A | 1 |
| AGGUA*AAA(PSU)A | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (6)
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (H) (1)
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.04 | Avg 0.11 | Max 0.19
Coloring options: