3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAGAAG*UGGUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_455 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3273
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4V7L|1|DA|C|1468
4V7L|1|DA|A|1469
4V7L|1|DA|G|1470
4V7L|1|DA|A|1471
4V7L|1|DA|A|1472
4V7L|1|DA|G|1473
*
4V7L|1|DA|U|1518
4V7L|1|DA|G|1519
4V7L|1|DA|G|1520
4V7L|1|DA|U|1523
4V7L|1|DA|G|1524

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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