IL_4V7M_040

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGCU*AGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGCU,AGCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_040 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2431

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

4V7M|1|AA|U|997
4V7M|1|AA|G|998
4V7M|1|AA|C|999
4V7M|1|AA|U|1000
*
4V7M|1|AA|A|1041
4V7M|1|AA|G|1042
4V7M|1|AA|C|1043
4V7M|1|AA|A|1044

Current chains

Chain AA

16S ribosomal RNA

Nearby chains