IL_4V7M_105

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_105 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.312

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7M|1|BA|G|1037
4V7M|1|BA|C|1038
4V7M|1|BA|G|1039
*
4V7M|1|BA|C|1116
4V7M|1|BA|G|1117
4V7M|1|BA|C|1118

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25