IL_4V7M_235
3D structure
- PDB id
- 4V7M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of Capreomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7M_235 not in the Motif Atlas
- Geometric match to IL_5VCI_002
- Geometric discrepancy: 0.1695
- The information below is about IL_5VCI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V7M|1|CA|G|1405
4V7M|1|CA|U|1406
4V7M|1|CA|C|1407
*
4V7M|1|CA|G|1494
4V7M|1|CA|U|1495
4V7M|1|CA|C|1496
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CV
- RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
- Chain CW
- Transfer RNA; tRNA
- Chain CZ
- capreomycin IA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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