IL_4V7M_244

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGG,CCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_244 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.3453

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7M|1|CY|A|50
4V7M|1|CY|G|51
4V7M|1|CY|G|52
*
4V7M|1|CY|C|60
4V7M|1|CY|C|61
4V7M|1|CY|U|62

Current chains

Chain CY

tRNA-Gln

Nearby chains

Chain DC

50S ribosomal protein L1