IL_4V7M_260

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_260 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2238

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V7M|1|DA|C|537
4V7M|1|DA|G|538
4V7M|1|DA|G|539
*
4V7M|1|DA|U|554
4V7M|1|DA|U|555
4V7M|1|DA|G|556

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L13

Chain DU

50S ribosomal protein L20