3D structure

PDB id
4V7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of Capreomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
4V7M|1|DA|G|1801, 4V7M|1|DA|G|1816, 4V7M|1|DA|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7M_310 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.0549
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

4V7M|1|DA|U|1798
4V7M|1|DA|G|1799
4V7M|1|DA|C|1800
4V7M|1|DA|G|1801
4V7M|1|DA|A|1802
4V7M|1|DA|A|1803
4V7M|1|DA|C|1804
*
4V7M|1|DA|G|1813
4V7M|1|DA|G|1814
4V7M|1|DA|A|1815
4V7M|1|DA|G|1816
4V7M|1|DA|G|1817
4V7M|1|DA|U|1818
4V7M|1|DA|A|1819
4V7M|1|DA|U|1820
4V7M|1|DA|A|1821

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DD
50S ribosomal protein L2

Coloring options:


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