IL_4V7M_312

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

4V7M|1|DA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_312 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.1858

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4V7M|1|DA|U|1841
4V7M|1|DA|G|1842
*
4V7M|1|DA|U|1898
4V7M|1|DA|G|1899
4V7M|1|DA|A|1900
4V7M|1|DA|A|1901

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2