IL_4V7M_330

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V7M|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_330 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3435

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V7M|1|DA|C|2129
4V7M|1|DA|U|2130
4V7M|1|DA|G|2131
4V7M|1|DA|U|2132
4V7M|1|DA|G|2133
4V7M|1|DA|A|2134
4V7M|1|DA|A|2135
4V7M|1|DA|C|2136
*
4V7M|1|DA|G|2155
4V7M|1|DA|G|2156
4V7M|1|DA|G|2157
4V7M|1|DA|A|2158
4V7M|1|DA|G|2159

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L1