3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CCCC*GG
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_010 not in the Motif Atlas
Geometric match to IL_7Q80_003
Geometric discrepancy: 0.2041
The information below is about IL_7Q80_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

4V7P|1|AA|C|136
4V7P|1|AA|C|136|||A
4V7P|1|AA|C|136|||B
4V7P|1|AA|C|137
*
4V7P|1|AA|G|226
4V7P|1|AA|G|227

Current chains

Chain AA
16S rRNA (1504-MER)

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AU
30S ribosomal protein Thx

Coloring options:


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