IL_4V7P_020

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_020 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.1781

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V7P|1|AA|G|446
4V7P|1|AA|G|447
4V7P|1|AA|A|448
4V7P|1|AA|C|449
4V7P|1|AA|G|450
*
4V7P|1|AA|C|483
4V7P|1|AA|G|484
4V7P|1|AA|G|485
4V7P|1|AA|U|486
4V7P|1|AA|A|487
4V7P|1|AA|C|488

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16

Chain CH

50S ribosomal protein L9