IL_4V7P_121

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V7P|1|BA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_121 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0939

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V7P|1|BA|C|1351
4V7P|1|BA|U|1352
4V7P|1|BA|A|1353
4V7P|1|BA|A|1354
4V7P|1|BA|G|1355
*
4V7P|1|BA|C|1376
4V7P|1|BA|G|1377
4V7P|1|BA|A|1378
4V7P|1|BA|A|1379
4V7P|1|BA|G|1380

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2