3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_162 not in the Motif Atlas
Homologous match to IL_7A0S_087
Geometric discrepancy: 0.1829
The information below is about IL_7A0S_087
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V7P|1|BA|C|2466
4V7P|1|BA|C|2467
4V7P|1|BA|G|2468
4V7P|1|BA|A|2469
4V7P|1|BA|G|2470
*
4V7P|1|BA|C|2480
4V7P|1|BA|G|2481
4V7P|1|BA|G|2482
4V7P|1|BA|C|2483
4V7P|1|BA|G|2484

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AV
Peptide chain release factor 1
Chain BM
50S ribosomal protein L16

Coloring options:


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