IL_4V7P_202

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V7P|1|CA|U|504, 4V7P|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_202 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0811

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V7P|1|CA|G|481
4V7P|1|CA|A|482
4V7P|1|CA|A|483
4V7P|1|CA|C|484
*
4V7P|1|CA|G|496
4V7P|1|CA|A|497
4V7P|1|CA|G|498
4V7P|1|CA|U|499
4V7P|1|CA|G|500
4V7P|1|CA|A|501
4V7P|1|CA|A|502
4V7P|1|CA|A|503
4V7P|1|CA|U|504
4V7P|1|CA|A|505
4V7P|1|CA|G|506
4V7P|1|CA|A|507
4V7P|1|CA|G|508
4V7P|1|CA|C|509

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24