IL_4V7P_225

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_225 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1362

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V7P|1|CA|C|1004
4V7P|1|CA|C|1005
4V7P|1|CA|C|1006
4V7P|1|CA|C|1007
4V7P|1|CA|C|1008
4V7P|1|CA|A|1009
4V7P|1|CA|A|1010
4V7P|1|CA|G|1011
*
4V7P|1|CA|C|1150
4V7P|1|CA|G|1151

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20