IL_4V7P_230

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V7P|1|CA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_230 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1902

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V7P|1|CA|C|1043
4V7P|1|CA|G|1044
4V7P|1|CA|A|1045
4V7P|1|CA|A|1046
4V7P|1|CA|G|1047
4V7P|1|CA|A|1048
4V7P|1|CA|C|1049
4V7P|1|CA|A|1050
4V7P|1|CA|G|1051
*
4V7P|1|CA|U|1108
4V7P|1|CA|C|1109
4V7P|1|CA|G|1110
4V7P|1|CA|A|1111
4V7P|1|CA|G|1112

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CG

50S ribosomal protein L6

Chain CI

50S ribosomal protein L10