3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GUUG*CAUC
Length
8 nucleotides
Bulged bases
4V7P|1|CA|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_231 not in the Motif Atlas
Homologous match to IL_5J7L_285
Geometric discrepancy: 0.538
The information below is about IL_5J7L_285
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92446.2
Basepair signature
cWW-cWW-R-L-L
Number of instances in this motif group
5

Unit IDs

4V7P|1|CA|G|1059
4V7P|1|CA|U|1060
4V7P|1|CA|U|1061
4V7P|1|CA|G|1062
*
4V7P|1|CA|C|1076
4V7P|1|CA|A|1077
4V7P|1|CA|U|1078
4V7P|1|CA|C|1079

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CM
50S ribosomal protein L16
Chain CV
50S ribosomal protein L25

Coloring options:


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