IL_4V7P_272

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_272 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.398

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V7P|1|CA|G|2110
4V7P|1|CA|C|2111
4V7P|1|CA|G|2112
4V7P|1|CA|U|2113
4V7P|1|CA|A|2114
4V7P|1|CA|G|2115
4V7P|1|CA|G|2116
4V7P|1|CA|A|2117
4V7P|1|CA|U|2118
4V7P|1|CA|A|2119
4V7P|1|CA|G|2120
*
4V7P|1|CA|C|2178
4V7P|1|CA|C|2179

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA