IL_4V7P_273

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_273 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.304

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V7P|1|CA|G|2124
4V7P|1|CA|G|2125
4V7P|1|CA|A|2126
4V7P|1|CA|G|2127
*
4V7P|1|CA|C|2161
4V7P|1|CA|G|2162
4V7P|1|CA|C|2163
4V7P|1|CA|C|2164
4V7P|1|CA|G|2165
4V7P|1|CA|G|2166
4V7P|1|CA|U|2167
4V7P|1|CA|G|2168
4V7P|1|CA|A|2169
4V7P|1|CA|A|2170
4V7P|1|CA|A|2171
4V7P|1|CA|U|2172
4V7P|1|CA|A|2173
4V7P|1|CA|C|2174

Current chains

Chain CA

23S ribosomal RNA

Nearby chains