IL_4V7P_314

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V7P|1|DA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_314 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1101

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V7P|1|DA|G|148
4V7P|1|DA|A|149
4V7P|1|DA|C|150
4V7P|1|DA|A|151
4V7P|1|DA|A|152
4V7P|1|DA|C|153
*
4V7P|1|DA|G|168
4V7P|1|DA|C|169
4V7P|1|DA|U|170
4V7P|1|DA|A|171
4V7P|1|DA|A|172
4V7P|1|DA|U|173
4V7P|1|DA|C|174

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DT

30S ribosomal protein S20