IL_4V7P_336
3D structure
- PDB id
- 4V7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Recognition of the amber stop codon by release factor RF1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V7P|1|DA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7P_336 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1042
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V7P|1|DA|G|683
4V7P|1|DA|A|684
4V7P|1|DA|G|685
4V7P|1|DA|U|686
4V7P|1|DA|A|687
4V7P|1|DA|G|688
*
4V7P|1|DA|C|699
4V7P|1|DA|G|700
4V7P|1|DA|C|701
4V7P|1|DA|A|702
4V7P|1|DA|G|703
4V7P|1|DA|A|704
4V7P|1|DA|U|705
4V7P|1|DA|A|706
4V7P|1|DA|C|707
Current chains
- Chain DA
- 16S rRNA (1504-MER)
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DK
- 30S ribosomal protein S11
Coloring options: