3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4V7P|1|DA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_336 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1042
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4V7P|1|DA|G|683
4V7P|1|DA|A|684
4V7P|1|DA|G|685
4V7P|1|DA|U|686
4V7P|1|DA|A|687
4V7P|1|DA|G|688
*
4V7P|1|DA|C|699
4V7P|1|DA|G|700
4V7P|1|DA|C|701
4V7P|1|DA|A|702
4V7P|1|DA|G|703
4V7P|1|DA|A|704
4V7P|1|DA|U|705
4V7P|1|DA|A|706
4V7P|1|DA|C|707

Current chains

Chain DA
16S rRNA (1504-MER)

Nearby chains

Chain CA
Large subunit ribosomal RNA; LSU rRNA
Chain DK
30S ribosomal protein S11

Coloring options:


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