3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7P_338 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0887
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V7P|1|DA|C|779
4V7P|1|DA|A|780
4V7P|1|DA|A|781
4V7P|1|DA|A|782
4V7P|1|DA|C|783
*
4V7P|1|DA|G|799
4V7P|1|DA|G|800
4V7P|1|DA|U|801
4V7P|1|DA|A|802
4V7P|1|DA|G|803

Current chains

Chain DA
16S rRNA (1504-MER)

Nearby chains

Chain CA
Large subunit ribosomal RNA; LSU rRNA
Chain DK
30S ribosomal protein S11

Coloring options:


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