IL_4V7P_342

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V7P|1|DA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_342 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1357

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V7P|1|DA|G|933
4V7P|1|DA|C|934
4V7P|1|DA|A|935
*
4V7P|1|DA|U|1380
4V7P|1|DA|U|1381
4V7P|1|DA|C|1382
4V7P|1|DA|C|1383
4V7P|1|DA|C|1384

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DG

30S ribosomal protein S7

Chain DI

30S ribosomal protein S9

Chain DW

Transfer RNA; tRNA