IL_4V7P_349

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_349 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.1327

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V7P|1|DA|G|1061
4V7P|1|DA|U|1062
4V7P|1|DA|C|1063
*
4V7P|1|DA|G|1193
4V7P|1|DA|U|1194
4V7P|1|DA|C|1195

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DE

30S ribosomal protein S5

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14

Chain DV

Peptide chain release factor 1

Chain DX

messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')