IL_4V7P_349
3D structure
- PDB id
- 4V7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Recognition of the amber stop codon by release factor RF1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7P_349 not in the Motif Atlas
- Homologous match to IL_4LFB_047
- Geometric discrepancy: 0.1327
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
4V7P|1|DA|G|1061
4V7P|1|DA|U|1062
4V7P|1|DA|C|1063
*
4V7P|1|DA|G|1193
4V7P|1|DA|U|1194
4V7P|1|DA|C|1195
Current chains
- Chain DA
- 16S rRNA (1504-MER)
Nearby chains
- Chain DC
- 30S ribosomal protein S3
- Chain DE
- 30S ribosomal protein S5
- Chain DI
- 30S ribosomal protein S9
- Chain DJ
- 30S ribosomal protein S10
- Chain DN
- 30S ribosomal protein S14
- Chain DV
- Peptide chain release factor 1
- Chain DX
- messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')
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