IL_4V7P_352

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7P_352 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.2022

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V7P|1|DA|C|1128
4V7P|1|DA|C|1129
4V7P|1|DA|A|1130
4V7P|1|DA|G|1131
4V7P|1|DA|C|1132
*
4V7P|1|DA|G|1142
4V7P|1|DA|G|1143

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DI

30S ribosomal protein S9