IL_4V7R_001

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCAU*AUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_001 not in the Motif Atlas

Geometric match to IL_8FEQ_001

Geometric discrepancy: 0.2391

The information below is about IL_8FEQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V7R|1|A1|U|24
4V7R|1|A1|C|25
4V7R|1|A1|A|26
4V7R|1|A1|U|27
*
4V7R|1|A1|A|599
4V7R|1|A1|U|600
4V7R|1|A1|A|601

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AP

40S ribosomal protein S23