IL_4V7R_015

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

4V7R|1|A1|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_015 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.2789

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V7R|1|A1|G|204
4V7R|1|A1|U|205
4V7R|1|A1|A|206
*
4V7R|1|A1|U|259
4V7R|1|A1|U|260
4V7R|1|A1|U|261
4V7R|1|A1|U|262
4V7R|1|A1|C|263

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Ah

Unassigned secondary structure