IL_4V7R_019

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

4V7R|1|A1|U|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_019 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.26

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7R|1|A1|U|318
4V7R|1|A1|U|319
4V7R|1|A1|U|320
4V7R|1|A1|C|321
4V7R|1|A1|G|322
4V7R|1|A1|A|323
*
4V7R|1|A1|U|345
4V7R|1|A1|G|346

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S11

Chain B1

Large subunit ribosomal RNA; LSU rRNA